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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1223443_1224187_R

Intron Information:

Intron Rank:
138898
Intron Class:
major
Intron Phase:
Intron Coordinates:
1223443 - 1224187
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CGCCTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68
0.41
0.8
60.6
29.5
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022227
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047376
1220873 - 1224362
3490