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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122345918_122358143_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122345918 - 122358143
Intron Length:
12226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTAAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTGCATTATTT
Flanking Amino Acid:
EKVKQYNQKLRAFYLDKSNL
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
74.4
37.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
31
-2.2
3.1
42.1
44.8
Minor BPS
57.7
0.32
2
80.9
41.2

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523