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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122402547_122457565_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122402547 - 122457565
Intron Length:
55019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTCCATTAATT
Flanking Amino Acid:
MNRCKELMTKLITET
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
100
1.24
0.5
100
0
Major PPT
65.1
0.34
1.1
64.5
40.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
70.6
0.72
1.5
85.57
33.8

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046366
122401943 - 122591279
189337