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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12242650_12243335_F

Intron Information:

Intron Rank:
130295
Intron Class:
major
Intron Phase:
Intron Coordinates:
12242650 - 12243335
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTGTC
5'SS Class:
major
3'SS Sequence:
TTAATTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AACTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
72.3
37.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.8
0.58
0.9
71
39.3
Minor 5ss
42.9
-0.8
3.2
57.9
42.1
Minor BPS
74.2
0.84
1.1
79.18
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020087
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023310
12242006 - 12244945
2940