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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122457714_122458562_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122457714 - 122458562
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTCTTTTAACA
Flanking Amino Acid:
AALWAESETSENKGTRRDFR
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.1
0.7
0.9
77.4
35
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
74.3
0.76
1.1
78.75
30.7

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031805
122420084 - 122591279
171196
ENSAPLT00000003737
122420940 - 122604493
183554
ENSAPLT00000003614
122420940 - 122604493
183554
ENSAPLT00000046366
122401943 - 122591279
189337