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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122458695_122466194_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122458695 - 122466194
Intron Length:
7500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTTC
5'SS Class:
major
3'SS Sequence:
TGTGTATATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CAAATCTAAACT
Flanking Amino Acid:
ISPPSPESKSLPRSIEHPKW
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.2
35.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
69.9
0.45
1
67.5
43
Minor 5ss
53
0.1
2.7
72.5
37.4
Minor BPS
52.3
0.15
1.7
66.25
44.1

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003614
122420940 - 122604493
183554
ENSAPLT00000046366
122401943 - 122591279
189337
ENSAPLT00000031805
122420084 - 122591279
171196