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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122479366_122485867_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122479366 - 122485867
Intron Length:
6502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SIAISDELDKDTTGFNTPLL
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.7
86
27.8
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031805
122420084 - 122591279
171196
ENSAPLT00000003737
122420940 - 122604493
183554
ENSAPLT00000003614
122420940 - 122604493
183554
ENSAPLT00000046366
122401943 - 122591279
189337