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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122486038_122489894_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122486038 - 122489894
Intron Length:
3857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAC
U12 Branch Point Sequence:
GTATCAGTAAGA
Flanking Amino Acid:
DSEDSSSPGGSLKMEPKSKG
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
61.5
0.29
1
58.7
38.1
Major PPT
82.5
0.73
0.7
76.6
25.4
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
45.5
-0.3
2.4
62.27
43.4

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031805
122420084 - 122591279
171196
ENSAPLT00000003737
122420940 - 122604493
183554
ENSAPLT00000003614
122420940 - 122604493
183554
ENSAPLT00000046366
122401943 - 122591279
189337