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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122490062_122533414_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122490062 - 122533414
Intron Length:
43353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACTGCA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TGCTACAAAATT
Flanking Amino Acid:
DNEDDAMELLEDLDDLRMEG
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66
40.2
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
38.1
-1.3
3.1
41.8
44.8
Minor BPS
46.3
-0.2
2.1
66.51
44.1

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003614
122420940 - 122604493
183554
ENSAPLT00000046366
122401943 - 122591279
189337
ENSAPLT00000031805
122420084 - 122591279
171196
ENSAPLT00000003737
122420940 - 122604493
183554