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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122533551_122551036_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122533551 - 122551036
Intron Length:
17486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCACAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TTTTCCACAATT
Flanking Amino Acid:
VTLNICARCARLQGDNMAER
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
66.4
0.37
0.9
63.7
36.8
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
67.7
0.63
1.8
89.6
34.6

Associated Gene:

Gene:
C8orf34
Ensembl Gene ID:
ENSAPLG00000003546
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003614
122420940 - 122604493
183554
ENSAPLT00000046366
122401943 - 122591279
189337
ENSAPLT00000031805
122420084 - 122591279
171196
ENSAPLT00000003737
122420940 - 122604493
183554