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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12268627_12274790_R

Intron Information:

Intron Rank:
153958
Intron Class:
major
Intron Phase:
Intron Coordinates:
12268627 - 12274790
Intron Length:
6164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTATA
5'SS Class:
major
3'SS Sequence:
TATGCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATATTGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
78.4
37.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.1
0.59
1
69.3
41.3
Minor 5ss
45.3
-0.5
2.6
60.7
43.8
Minor BPS
60.7
0.41
2
78.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030315
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048030
12268244 - 12280604
12361