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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122688247_122714851_F

Intron Information:

Intron Rank:
138521
Intron Class:
major
Intron Phase:
Intron Coordinates:
122688247 - 122714851
Intron Length:
26605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGAG
5'SS Class:
major
3'SS Sequence:
TTGATTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65
41.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74
0.54
1
69.7
40.7
Minor 5ss
30.8
-2.2
3.4
35.9
42.5
Minor BPS
66.4
0.6
1.3
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035095
122687547 - 122714986
27440