About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122688247_122733031_F

Intron Information:

Intron Rank:
138522
Intron Class:
major
Intron Phase:
Intron Coordinates:
122688247 - 122733031
Intron Length:
44785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGAG
5'SS Class:
major
3'SS Sequence:
CCTTACCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTCTCCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65
41.1
Major BPS
71.2
0.53
1
61
37.5
Major PPT
75.8
0.58
0.8
69.7
30.7
Minor 5ss
30.8
-2.2
3.4
35.9
42.5
Minor BPS
71.4
0.75
1.7
83.36
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035230
122687547 - 122734090
46544