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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122733114_122733872_F

Intron Information:

Intron Rank:
138523
Intron Class:
major
Intron Phase:
Intron Coordinates:
122733114 - 122733872
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.6
0.82
0.8
81
35.3
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
54
0.12
2.2
74.26
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046526
122733032 - 122760069
27038