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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122733962_122736062_F

Intron Information:

Intron Rank:
138514
Intron Class:
major
Intron Phase:
Intron Coordinates:
122733962 - 122736062
Intron Length:
2101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCACTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TTCACTTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
66.6
0.37
1
62.5
37.4
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
53.1
0.08
1.7
64.63
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022390
122733873 - 122760069
26197