About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122736482_122746719_F

Intron Information:

Intron Rank:
138515
Intron Class:
major
Intron Phase:
Intron Coordinates:
122736482 - 122746719
Intron Length:
10238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTAAAG
5'SS Class:
major
3'SS Sequence:
AATGTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATGTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.2
58.3
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.4
0.41
1.1
67.6
42
Minor 5ss
35.3
-1.7
2.7
40.8
45.1
Minor BPS
63.9
0.51
1.5
77.65
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022390
122733873 - 122760069
26197