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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122746767_122747756_F

Intron Information:

Intron Rank:
138516
Intron Class:
major
Intron Phase:
Intron Coordinates:
122746767 - 122747756
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCACAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TCTTGTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
74.3
38
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
66
0.36
1.1
67.9
37.1
Minor 5ss
32.5
-2
3
40.8
45.4
Minor BPS
53.3
0.1
2.2
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022390
122733873 - 122760069
26197
ENSAPLT00000046526
122733032 - 122760069
27038
ENSAPLT00000032771
122733560 - 122762205
28646