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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12274889_12280007_R

Intron Information:

Intron Rank:
153959
Intron Class:
major
Intron Phase:
Intron Coordinates:
12274889 - 12280007
Intron Length:
5119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030315
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048030
12268244 - 12280604
12361