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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12277937_12280007_R

Intron Information:

Intron Rank:
153957
Intron Class:
major
Intron Phase:
Intron Coordinates:
12277937 - 12280007
Intron Length:
2071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030315
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032667
12277671 - 12280382
2712