About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12287679_12290444_R

Intron Information:

Intron Rank:
131076
Intron Class:
major
Intron Phase:
Intron Coordinates:
12287679 - 12290444
Intron Length:
2766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
ATCCACTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTCTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68.3
0.41
1
61.7
39
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
58.6
0.35
1.6
80.89
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036504
12287067 - 12291353
4287
ENSAPLT00000026371
12287067 - 12291060
3994