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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12290541_12290925_R

Intron Information:

Intron Rank:
131077
Intron Class:
major
Intron Phase:
Intron Coordinates:
12290541 - 12290925
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TCATCCTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTCCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.2
60.4
44.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
66.6
0.37
0.9
65.6
35.8
Minor 5ss
37.6
-1.4
3.1
54.7
42.7
Minor BPS
56
0.17
1.9
70.9
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026371
12287067 - 12291060
3994