About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12290541_12291313_R

Intron Information:

Intron Rank:
131074
Intron Class:
major
Intron Phase:
Intron Coordinates:
12290541 - 12291313
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTGCCT
5'SS Class:
major
3'SS Sequence:
TCATCCTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTCCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
55.9
42.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
66.6
0.37
0.9
65.6
35.8
Minor 5ss
26.6
-2.7
3.4
39.4
46
Minor BPS
56
0.17
1.9
70.9
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036504
12287067 - 12291353
4287
ENSAPLT00000018707
12287067 - 12291353
4287