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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122909675_122909770_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
122909675 - 122909770
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGCTTAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
74.1
34.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.8
0.74
0.7
76.6
25.6
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
66.5
0.5
1.9
77.12
38.4

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045374
122909632 - 122980933
71302