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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122910006_122915645_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122910006 - 122915645
Intron Length:
5640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TAATCAGTACCT
Flanking Amino Acid:
VLTDDQDVELGSLQVMNKTR
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
91.5
0.93
0.6
87.3
23
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
46.4
-0.2
2.4
71.36
44.9

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021253
122874831 - 122980933
106103
ENSAPLT00000003814
122874831 - 122980261
105431
ENSAPLT00000045374
122909632 - 122980933
71302
ENSAPLT00000044677
122909834 - 122974368
64535