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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122941587_122942603_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122941587 - 122942603
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTCA
5'SS Class:
major
3'SS Sequence:
TGCTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTTGCTGTATTT
Flanking Amino Acid:
LMSVDDSMERLYRMLMEMGE
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.4
34.1
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
77.2
0.61
0.9
73.7
40.6
Minor 5ss
36.3
-1.6
2.8
38.1
40.6
Minor BPS
48.3
-0
2.3
74.81
43.2

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003814
122874831 - 122980261
105431
ENSAPLT00000045374
122909632 - 122980933
71302
ENSAPLT00000044677
122909834 - 122974368
64535
ENSAPLT00000021253
122874831 - 122980933
106103