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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122942780_122943325_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122942780 - 122943325
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTACGTTCT
5'SS Class:
major
3'SS Sequence:
TCTTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTCTCTTGATT
Flanking Amino Acid:
IRGPSVEPGSVVPQIVLNID
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
65.5
41.1
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
83.2
0.75
0.8
77.1
36.1
Minor 5ss
43.8
-0.7
3
59.8
44.6
Minor BPS
75.4
0.88
1.1
88.08
30.2

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021253
122874831 - 122980933
106103
ENSAPLT00000003814
122874831 - 122980261
105431
ENSAPLT00000045374
122909632 - 122980933
71302
ENSAPLT00000044677
122909834 - 122974368
64535