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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122943455_122943720_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122943455 - 122943720
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
ATTTTGGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
KLLDLERPGNRFRTNKKTKI
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.7
0.69
1
77.4
41.2
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044677
122909834 - 122974368
64535
ENSAPLT00000021253
122874831 - 122980933
106103
ENSAPLT00000003814
122874831 - 122980261
105431
ENSAPLT00000045374
122909632 - 122980933
71302