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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122943778_122944726_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122943778 - 122944726
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
IWRDTFLVERGKFLRKKEEN
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.7
34.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
41.3
-1
2.9
52.3
44.3
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044677
122909834 - 122974368
64535
ENSAPLT00000021253
122874831 - 122980933
106103
ENSAPLT00000003814
122874831 - 122980261
105431
ENSAPLT00000045374
122909632 - 122980933
71302