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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122963404_122963492_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122963404 - 122963492
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
ATACTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TAATTCTGACTA
Flanking Amino Acid:
KDHKAYIDKEIEALQDKIKN
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.8
0.6
0.9
70.4
35.4
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
50.1
0
1.7
61.89
38.3

Associated Gene:

Gene:
SULF1
Ensembl Gene ID:
ENSAPLG00000003673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045374
122909632 - 122980933
71302
ENSAPLT00000044677
122909834 - 122974368
64535
ENSAPLT00000021253
122874831 - 122980933
106103
ENSAPLT00000003814
122874831 - 122980261
105431