About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122986606_122993015_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
122986606 - 122993015
Intron Length:
6410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
TCTTATGATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATCCTGTAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
66.5
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70.7
0.47
1
65.5
40
Minor 5ss
36.3
-1.6
3.3
43.5
46
Minor BPS
59.6
0.3
2
73.96
37.6

Associated Gene:

Gene:
SLCO5A1
Ensembl Gene ID:
ENSAPLG00000004488
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004611
122986488 - 123061457
74970