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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123015954_123016436_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123015954 - 123016436
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CCTTCCTTTACT
Flanking Amino Acid:
IPASNASIYTG*
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
73.4
0.82
1.6
84
43

Associated Gene:

Gene:
SLCO5A1
Ensembl Gene ID:
ENSAPLG00000004488
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034415
123014727 - 123061086
46360