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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123016602_123024304_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123016602 - 123024304
Intron Length:
7703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCACTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTATTTATAACA
Flanking Amino Acid:
ASMGFGKNVKELPRAAVRIL
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.6
0.58
0.9
69.1
36.7
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
65.7
0.49
1.5
76.69
33.9

Associated Gene:

Gene:
SLCO5A1
Ensembl Gene ID:
ENSAPLG00000004488
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034415
123014727 - 123061086
46360
ENSAPLT00000004611
122986488 - 123061457
74970