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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123030245_123060209_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123030245 - 123060209
Intron Length:
29965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAACA
Flanking Amino Acid:
VKKENASLYLAIMYVMGALG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86
0.81
0.7
85
29.6
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
63.2
0.41
2
78.05
38.2

Associated Gene:

Gene:
SLCO5A1
Ensembl Gene ID:
ENSAPLG00000004488
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034415
123014727 - 123061086
46360
ENSAPLT00000004611
122986488 - 123061457
74970
ENSAPLT00000034820
122993028 - 123061457
68430