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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123069205_123074872_F

Intron Information:

Intron Rank:
140548
Intron Class:
major
Intron Phase:
Intron Coordinates:
123069205 - 123074872
Intron Length:
5668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTAG
5'SS Class:
major
3'SS Sequence:
TTTCACCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GATTCCACAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.2
42.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.9
0.69
0.8
74.3
30.4
Minor 5ss
43.7
-0.7
2.9
56.3
47.9
Minor BPS
53.6
0.09
1.8
66.22
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025662
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046255
123069053 - 123075939
6887