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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123136811_123138262_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123136811 - 123138262
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCCTTTTAATT
Flanking Amino Acid:
HVHEKHRPHKCSVCGKSFSQ
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
70.4
0.72
1.2
80.3
36.2

Associated Gene:

Gene:
PRDM14
Ensembl Gene ID:
ENSAPLG00000008064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040426
123134011 - 123141438
7428