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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123136811_123139228_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123136811 - 123139228
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGCGCA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCCTTTTAATT
Flanking Amino Acid:
YSKAGAGGRMCSVCGKSFSQ
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.1
54.7
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
29.9
-2.3
3.5
35
43.6
Minor BPS
70.4
0.72
1.2
80.3
36.2

Associated Gene:

Gene:
PRDM14
Ensembl Gene ID:
ENSAPLG00000008064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008367
123129187 - 123141030
11844