Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123139270_123140024_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

123139270 - 123140024

Intron Length:

755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCGG

5'SS Class:

strong_major

3'SS Sequence:

GGTTTGAAAAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGAAA

U12 Branch Point Sequence:

TGGGTTTGAAAA

Flanking Amino Acid:

EGMRPPPHPEDLCKYSKAGA

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

59.7

46.7

Major BPS

65.4

0.38

1.4

75.9

36.3

Major PPT

48.8

-0

1.2

46.8

43.3

Minor 5ss

31.8

-2.1

38.6

46.5

Minor BPS

46.6

-0.2

1.6

53.42

Associated Gene:

Gene:

PRDM14

Ensembl Gene ID:

ENSAPLG00000008064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008367

123129187 - 123141030

11844