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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123152841_123157599_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123152841 - 123157599
Intron Length:
4759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCTTTCTCCACT
Flanking Amino Acid:
MIKQDGDATRKYC*
Intron Amino Acid Position:
1462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.1
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
77.6
0.62
0.9
75.3
33.1
Minor 5ss
31.7
-2.1
3.4
39
46.2
Minor BPS
57.9
0.33
2
79.4
43

Associated Gene:

Gene:
NCOA2
Ensembl Gene ID:
ENSAPLG00000007560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021362
123151892 - 123229981
78090