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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123160585_123162534_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123160585 - 123162534
Intron Length:
1950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
CTACTCTAAACT
Flanking Amino Acid:
SGLSSMGPEQKYTQSNWAQ*
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
73
0.57
1
73.6
28.6
Major PPT
81.1
0.7
0.9
74
41
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
58.6
0.35
1.7
73.66
43.1

Associated Gene:

Gene:
NCOA2
Ensembl Gene ID:
ENSAPLG00000007560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007930
123160463 - 123229981
69519