Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123162734_123165055_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123162734 - 123165055

Intron Length:

2322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATCCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTGCTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

GCTTTTTCCATT

Flanking Amino Acid:

GWAQGNMGGNSMFSQQSPPH

Intron Amino Acid Position:

1365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

36.5

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

77.2

0.61

0.8

72.4

32.4

Minor 5ss

33.9

-1.8

2.9

42.4

44.3

Minor BPS

46.5

-0.1

1.9

63.62

41.8

Associated Gene:

Gene:

NCOA2

Ensembl Gene ID:

ENSAPLG00000007560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007930

123160463 - 123229981

69519

ENSAPLT00000021362

123151892 - 123229981

78090