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Intron Name: Anas_platyrhynchos_platyrhynchos_2_123177180_123179163_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123177180 - 123179163

Intron Length:

1984

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

GGCTTTTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTGAA

U12 Branch Point Sequence:

CGCACCTGAATC

Flanking Amino Acid:

SQGTLGNSSAGMISGNAPRP

Intron Amino Acid Position:

936

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.6

33.3

Major BPS

60.8

0.27

51.3

35.5

Major PPT

73.8

0.53

68.5

42.1

Minor 5ss

35.2

-1.7

49.5

46.3

Minor BPS

52.5

0.06

1.5

56.65

41.9

Associated Gene:

Gene:

NCOA2

Ensembl Gene ID:

ENSAPLG00000007560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021362

123151892 - 123229981

78090

ENSAPLT00000007930

123160463 - 123229981

69519