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Intron Name: Anas_platyrhynchos_platyrhynchos_2_123195633_123198985_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123195633 - 123198985

Intron Length:

3353

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTCATTTATT

Flanking Amino Acid:

ISFAKRHHQEVLRQGLAFSP

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

1.1

80.7

34.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

85.9

0.81

0.8

80.6

31.5

Minor 5ss

-1.2

3.3

56.2

Minor BPS

60.6

0.42

1.9

81.15

40.6

Associated Gene:

Gene:

NCOA2

Ensembl Gene ID:

ENSAPLG00000007560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021362

123151892 - 123229981

78090

ENSAPLT00000007930

123160463 - 123229981

69519