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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123199127_123199242_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123199127 - 123199242
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGA
5'SS Class:
major
3'SS Sequence:
TATCTAATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTATCTAATC
Flanking Amino Acid:
ESFTTRQDLQGKITSLDTSS
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.2
39.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.3
0.55
0.9
71
38.3
Minor 5ss
42.3
-0.9
3.1
56.3
47.9
Minor BPS
60
0.29
1.8
75.96
34.2

Associated Gene:

Gene:
NCOA2
Ensembl Gene ID:
ENSAPLG00000007560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021362
123151892 - 123229981
78090
ENSAPLT00000007930
123160463 - 123229981
69519