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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123200405_123201796_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123200405 - 123201796
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATATG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTTATCTCACTG
Flanking Amino Acid:
FVKILLPKSLVNGGSWSGDT
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.8
38.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
81.2
0.7
0.9
80.5
37
Minor 5ss
44.8
-0.6
2.7
59.2
45.4
Minor BPS
48.5
-0.2
1.9
59.71
42.6

Associated Gene:

Gene:
NCOA2
Ensembl Gene ID:
ENSAPLG00000007560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021362
123151892 - 123229981
78090
ENSAPLT00000007930
123160463 - 123229981
69519