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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123201975_123206833_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123201975 - 123206833
Intron Length:
4859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TCTCCCCCCACC
Flanking Amino Acid:
KDALGPMMLEALDGFFFVVN
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
45
-0.4
2.2
61.15
43.9

Associated Gene:

Gene:
NCOA2
Ensembl Gene ID:
ENSAPLG00000007560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021362
123151892 - 123229981
78090
ENSAPLT00000007930
123160463 - 123229981
69519