Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123228974_123229879_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123228974 - 123229879

Intron Length:

906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGACCA

5'SS Class:

major

3'SS Sequence:

ACTCCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTTTTTAAACT

Flanking Amino Acid:

KRKDPDQLGPSPKRSTEKRN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.2

66.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

80.7

0.69

0.8

77.2

30.7

Minor 5ss

28.6

-2.5

2.7

32.5

41.6

Minor BPS

69.1

0.68

1.6

85.39

35.1

Associated Gene:

Gene:

NCOA2

Ensembl Gene ID:

ENSAPLG00000007560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021362

123151892 - 123229981

78090

ENSAPLT00000007930

123160463 - 123229981

69519