About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123354153_123355089_R

Intron Information:

Intron Rank:
148608
Intron Class:
major
Intron Phase:
Intron Coordinates:
123354153 - 123355089
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037600
123352527 - 123356067
3541
ENSAPLT00000035279
123352527 - 123356067
3541