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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123354153_123356022_R

Intron Information:

Intron Rank:
148604
Intron Class:
major
Intron Phase:
Intron Coordinates:
123354153 - 123356022
Intron Length:
1870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034009
123352527 - 123359277
6751