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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123354153_123358435_R

Intron Information:

Intron Rank:
148601
Intron Class:
major
Intron Phase:
Intron Coordinates:
123354153 - 123358435
Intron Length:
4283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCGA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
28.7
-2.4
3.4
38.4
46.6
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033278
123352527 - 123359277
6751