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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123354153_123373526_R

Intron Information:

Intron Rank:
148612
Intron Class:
major
Intron Phase:
Intron Coordinates:
123354153 - 123373526
Intron Length:
19374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047156
123354035 - 123373590
19556